Table 1

Mature miRNAs that underwent significant differential up- or down-regulation following SNL nerve injury in HA vs. LA rats
miRNA identifier name Mean RPM (sham pools) Mean RPM (SNL pools) SNL-regsubtraction method (SNL/sham fold-change) diff-reg qFDR   chr. #
HA LA HA LA HA    LA   HA-LA   HA-LA
subtraction method, all pools
rno-miR-30d-5p 9,187 11,047 8,140 11,168 −0.121 (−1.129) 0.011 (1.011) −0.132 (0.297) <0.001 7
rno-miR-378b 51.6 47.1 58.6 33.7 0.125 (1.136) −0.331 (−1.398) 0.457 (0.533) <0.001 5
rno-miR-322-3p 30.7 29.4 20.8 32.8 −0.384 (−1.476) 0.109 (1.116) −0.494 (0.592) <0.001 X
added by log2 ratio method or randomization *, all pools
rno-miR-493-3p 79.8 66.3 87.9 91.0 0.138 (1.102) 0.455 (1.373) 0.317 (0.271) <0.001 6
rno-miR-1839-5p * 112.1 108.9 100.3 129.1 −0.110 (−1.118) 0.168 (1.185) −0.278 (.303) <0.05 1
added by HA_SNL1 pool exclusion
rno-miR-125b-5p 3,758 2,537 2,718 2,398 −0.321 (−1.383) −0.056 (−1.058) −0.265 (0.325) 0.002 8
rno-miR-379-5p 201.9 187.5 188.6 231.6 −0.068 (−1.071) 0.210 1.235 −0.278 (0.306) 0.04 6
rno-miR-369-3p 12.0 13.6 16.9 15.8 0.337 (1.408) 0.148 (1.162) 0.189 (0.246) 0.03 6
rno-let-7f-2-3p 11.7 8.1 10.4 12.8 −0.119 (−1.125) 0.448 (1.580) −0.567 (0.705) 0.03 X
rno-miR-340-3p 8.9 11.5 12.6 9.3 0.346 (1.416) −0.215 (−1.237) 0.561 (0.653) 0.03 10
rno-miR-6331 15.0 10.5 11.8 13.2 −0.241 (−1.271) 0.226 (1.257) −0.467 (0.528) 0.05 6

Relatively abundant transcripts are in bold font.

Bali et al.

Bali et al. Molecular Pain 2014 10:22   doi:10.1186/1744-8069-10-22

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